- recipe bioconductor-rbowtie2
An R Wrapper for Bowtie2 and AdapterRemoval
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/Rbowtie2.html
- License:
GPL (>= 3)
- Recipe:
This package provides an R wrapper of the popular bowtie2 sequencing reads aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification, and read merging. The package contains wrapper functions that allow for genome indexing and alignment to those indexes. The package also allows for the creation of .bam files via Rsamtools.
- package bioconductor-rbowtie2¶
-
- Versions:
2.4.0-0
,2.0.0-2
,2.0.0-1
,2.0.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,2.4.0-0
,2.0.0-2
,2.0.0-1
,2.0.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
- Depends:
bioconductor-rsamtools
>=2.14.0,<2.15.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
libzlib
>=1.2.13,<1.3.0a0
r-base
>=4.2,<4.3.0a0
zlib
>=1.2.13,<1.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rbowtie2
and update with:
conda update bioconductor-rbowtie2
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rbowtie2:<tag>
(see bioconductor-rbowtie2/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rbowtie2/README.html)