recipe bioconductor-rcistarget

RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RcisTarget.html

License:

GPL-3

Recipe:

/bioconductor-rcistarget/meta.yaml

RcisTarget identifies transcription factor binding motifs (TFBS) over-represented on a gene list. In a first step, RcisTarget selects DNA motifs that are significantly over-represented in the surroundings of the transcription start site (TSS) of the genes in the gene-set. This is achieved by using a database that contains genome-wide cross-species rankings for each motif. The motifs that are then annotated to TFs and those that have a high Normalized Enrichment Score (NES) are retained. Finally, for each motif and gene-set, RcisTarget predicts the candidate target genes (i.e. genes in the gene-set that are ranked above the leading edge).

package bioconductor-rcistarget

(downloads) docker_bioconductor-rcistarget

Versions:
1.17.0-01.14.0-01.12.0-01.10.0-11.10.0-01.8.0-01.6.0-01.4.0-11.2.1-0

1.17.0-01.14.0-01.12.0-01.10.0-11.10.0-01.8.0-01.6.0-01.4.0-11.2.1-01.2.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rcistarget

and update with:

conda update bioconductor-rcistarget

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcistarget:<tag>

(see bioconductor-rcistarget/tags for valid values for <tag>)

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