recipe bioconductor-rcwl

An R interface to the Common Workflow Language

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Rcwl.html

License:

GPL-2 | file LICENSE

Recipe:

/bioconductor-rcwl/meta.yaml

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

package bioconductor-rcwl

Versions:

1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.2-0

Depends:

• bioconductor-basilisk >=1.9.0,<1.10.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-batchtools

• r-codetools

• r-diagrammer

• r-r.utils

• r-shiny

• r-yaml

Required By:

• bioconductor-rcwlpipelines

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rcwl

and update with:

conda update bioconductor-rcwl

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcwl:<tag>

(see bioconductor-rcwl/tags for valid values for <tag>)

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Link to this page

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