recipe bioconductor-rcwl

An R interface to the Common Workflow Language

Homepage

https://bioconductor.org/packages/3.12/bioc/html/Rcwl.html

License

GPL-2 | file LICENSE

Recipe

/bioconductor-rcwl/meta.yaml

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

package bioconductor-rcwl

Versions

1.6.0-0,  1.4.2-0

Depends

• bioconductor-biocparallel >=1.24.0,<1.25.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• cwltool >=1.0.2018

• python >=2.7

• r-base >=4.0,<4.1.0a0

• r-batchtools

• r-codetools

• r-diagrammer

• r-r.utils

• r-shiny

• r-yaml

Required By

• bioconductor-rcwlpipelines

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rcwl

and update with:

conda update bioconductor-rcwl

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcwl:<tag>

(see bioconductor-rcwl/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rcwl/README.html)