recipe bioconductor-rcy3

Functions to Access and Control Cytoscape

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RCy3.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-rcy3/meta.yaml

Vizualize, analyze and explore networks using Cytoscape via R. Anything you can do using the graphical user interface of Cytoscape, you can now do with a single RCy3 function.

package bioconductor-rcy3

Versions:

2.18.0-0,  2.14.0-0,  2.12.0-0,  2.10.2-0,  2.10.0-0,  2.8.0-0,  2.6.0-0,  2.4.3-0,  2.2.9-0, 

2.18.0-0,  2.14.0-0,  2.12.0-0,  2.10.2-0,  2.10.0-0,  2.8.0-0,  2.6.0-0,  2.4.3-0,  2.2.9-0,  2.2.6-0,  2.0.88-0,  1.8.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-graph >=1.76.0,<1.77.0

• cytoscape >=3.7.1

• r-base >=4.2,<4.3.0a0

• r-base64enc

• r-base64url

• r-fs

• r-glue

• r-gplots

• r-httr

• r-irdisplay

• r-irkernel

• r-rcolorbrewer

• r-rcurl

• r-rjsonio

• r-uchardet

• r-uuid

• r-xml

Required By:

• bioconductor-regutools

• bioconductor-cetf

• bioconductor-fedup

• bioconductor-mogamun

• bioconductor-timirgen

• bioconductor-transomics2cytoscape

• bioconductor-netzoor

• bioconductor-categorycompare

• bioconductor-ncigraph

• bioconductor-metaphor

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rcy3

and update with:

conda update bioconductor-rcy3

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcy3:<tag>

(see bioconductor-rcy3/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rcy3/README.html)