- recipe bioconductor-redseq
Analysis of high-throughput sequencing data processed by restriction enzyme digestion
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/REDseq.html
- License
GPL (>=2)
- Recipe
The package includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.
- package bioconductor-redseq¶
-
- Versions
1.40.0-0
,1.38.0-0
,1.36.0-1
,1.36.0-0
,1.34.0-0
,1.32.0-0
,1.30.0-1
,1.28.0-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-bsgenome.celegans.ucsc.ce2
>=1.4.0,<1.5.0
bioconductor-chippeakanno
>=3.28.0,<3.29.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-multtest
>=2.50.0,<2.51.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-redseq
and update with:
conda update bioconductor-redseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-redseq:<tag>
(see bioconductor-redseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-redseq/README.html)