recipe bioconductor-redseq

The package includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/REDseq.html

License

GPL (>=2)

Recipe

/bioconductor-redseq/meta.yaml

package bioconductor-redseq

Versions

1.28.0-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-bsgenome >=1.50.0,<1.51.0

• bioconductor-bsgenome.celegans.ucsc.ce2 >=1.4.0,<1.5.0

• bioconductor-chippeakanno >=3.16.0,<3.17.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-multtest >=2.38.0,<2.39.0

• r-base >=3.5.1,<3.5.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-redseq

and update with:

conda update bioconductor-redseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-redseq:<tag>

(see bioconductor-redseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-redseq/README.html)