recipe bioconductor-redseq

Analysis of high-throughput sequencing data processed by restriction enzyme digestion

Homepage

https://bioconductor.org/packages/3.14/bioc/html/REDseq.html

License

GPL (>=2)

Recipe

/bioconductor-redseq/meta.yaml

The package includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.

package bioconductor-redseq

Versions

1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-bsgenome >=1.62.0,<1.63.0

• bioconductor-bsgenome.celegans.ucsc.ce2 >=1.4.0,<1.5.0

• bioconductor-chippeakanno >=3.28.0,<3.29.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-multtest >=2.50.0,<2.51.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-redseq

and update with:

conda update bioconductor-redseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-redseq:<tag>

(see bioconductor-redseq/tags for valid values for <tag>)

Download stats

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