recipe bioconductor-regioner

Association analysis of genomic regions based on permutation tests

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/regioneR.html

License:

Artistic-2.0

Recipe:

/bioconductor-regioner/meta.yaml

Links:

biotools: regioner

regioneR offers a statistical framework based on customizable permutation tests to assess the association between genomic region sets and other genomic features.

package bioconductor-regioner

Versions:

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.2-0,  1.14.0-0, 

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.2-0,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.1-0,  1.6.2-0,  1.2.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-memoise

Required By:

• bioconductor-chippeakanno

• bioconductor-annotatr

• bioconductor-copynumberplots

• bioconductor-umi4cats

• bioconductor-regionereloaded

• bioconductor-cnvfilter

• bioconductor-ripat

• bioconductor-rlseq

• bioconductor-karyoploter

• bioconductor-rgntx

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-regioner

and update with:

conda update bioconductor-regioner

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-regioner:<tag>

(see bioconductor-regioner/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-regioner/README.html)