- recipe bioconductor-regioner
Association analysis of genomic regions based on permutation tests
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/regioneR.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: regioner
regioneR offers a statistical framework based on customizable permutation tests to assess the association between genomic region sets and other genomic features.
- package bioconductor-regioner¶
-
- Versions:
1.30.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.2-0
,1.14.0-0
,1.30.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.2-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.1-0
,1.6.2-0
,1.2.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-regioner
and update with:
conda update bioconductor-regioner
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-regioner:<tag>
(see bioconductor-regioner/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-regioner/README.html)