recipe bioconductor-repitools

Tools for the analysis of enrichment-based epigenomic data. Features include summarization and visualization of epigenomic data across promoters according to gene expression context, finding regions of differential methylation/binding, BayMeth for quantifying methylation etc.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/Repitools.html

License

LGPL (>= 2)

Recipe

/bioconductor-repitools/meta.yaml

Links

biotools: repitools

package bioconductor-repitools

(downloads) docker_bioconductor-repitools

Versions

1.28.0-0, 1.26.0-0, 1.24.0-0, 1.22.0-0, 1.20.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-bsgenome

>=1.50.0,<1.51.0

Depends bioconductor-dnacopy

>=1.56.0,<1.57.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-ringo

>=1.46.0,<1.47.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends libgcc-ng

>=7.3.0

Depends r-aroma.affymetrix

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

Depends r-gplots

Depends r-gsmoothr

Depends r-mass

Depends r-rsolnp

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-repitools

and update with:

conda update bioconductor-repitools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-repitools:<tag>

(see bioconductor-repitools/tags for valid values for <tag>)