recipe bioconductor-reportingtools

The ReportingTools software package enables users to easily display reports of analysis results generated from sources such as microarray and sequencing data. The package allows users to create HTML pages that may be viewed on a web browser such as Safari, or in other formats readable by programs such as Excel. Users can generate tables with sortable and filterable columns, make and display plots, and link table entries to other data sources such as NCBI or larger plots within the HTML page. Using the package, users can also produce a table of contents page to link various reports together for a particular project that can be viewed in a web browser. For more examples, please visit our site: http:// research-pub.gene.com/ReportingTools.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ReportingTools.html

License

Artistic-2.0

Recipe

/bioconductor-reportingtools/meta.yaml

Links

biotools: reportingtools

package bioconductor-reportingtools

(downloads) docker_bioconductor-reportingtools

Versions

2.22.1-0, 2.22.0-0, 2.20.0-0, 2.17.3-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-category

>=2.48.0,<2.49.0

Depends bioconductor-deseq2

>=1.22.0,<1.23.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-ggbio

>=1.30.0,<1.31.0

Depends bioconductor-gostats

>=2.48.0,<2.49.0

Depends bioconductor-gseabase

>=1.44.0,<1.45.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-pfam.db

>=3.7.0,<3.8.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-hwriter

Depends r-knitr

Depends r-lattice

Depends r-r.utils

Depends r-xml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-reportingtools

and update with:

conda update bioconductor-reportingtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-reportingtools:<tag>

(see bioconductor-reportingtools/tags for valid values for <tag>)