recipe bioconductor-residualmatrix

Creating a DelayedMatrix of Regression Residuals

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ResidualMatrix.html

License:

GPL-3

Recipe:

/bioconductor-residualmatrix/meta.yaml

Provides delayed computation of a matrix of residuals after fitting a linear model to each column of an input matrix. Also supports partial computation of residuals where selected factors are to be preserved in the output matrix. Implements a number of efficient methods for operating on the delayed matrix of residuals, most notably matrix multiplication and calculation of row/column sums or means.

package bioconductor-residualmatrix

(downloads) docker_bioconductor-residualmatrix

versions:

1.12.0-0,  1.10.0-0,  1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

depends bioconductor-delayedarray:

>=0.28.0,<0.29.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends r-base:

>=4.3,<4.4.0a0

depends r-matrix:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-residualmatrix

and update with::

   mamba update bioconductor-residualmatrix

To create a new environment, run:

mamba create --name myenvname bioconductor-residualmatrix

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-residualmatrix:<tag>

(see `bioconductor-residualmatrix/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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