recipe bioconductor-restfulse

Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/restfulSE.html

License:

Artistic-2.0

Recipe:

/bioconductor-restfulse/meta.yaml

This package provides functions and classes to interface with remote data stores by operating on SummarizedExperiment-like objects.

package bioconductor-restfulse

versions:

1.24.0-0,  1.22.0-0,  1.20.0-0,  1.16.0-0,  1.13.1-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0, 

1.24.0-0,  1.22.0-0,  1.20.0-0,  1.16.0-0,  1.13.1-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

depends bioconductor-annotationdbi:

>=1.64.0,<1.65.0

depends bioconductor-annotationhub:

>=3.10.0,<3.11.0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-delayedarray:

>=0.28.0,<0.29.0

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends bioconductor-go.db:

>=3.18.0,<3.19.0

depends bioconductor-rhdf5client:

>=1.24.0,<1.25.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-base:

>=4.3,<4.4.0a0

depends r-bigrquery:

depends r-dbi:

depends r-dplyr:

>=0.7.1

depends r-magrittr:

depends r-reshape2:

depends r-rlang:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-restfulse

and update with::

   mamba update bioconductor-restfulse

To create a new environment, run:

mamba create --name myenvname bioconductor-restfulse

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-restfulse:<tag>

(see `bioconductor-restfulse/tags`_ for valid values for ``<tag>``)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-restfulse/README.html)