- recipe bioconductor-rfastp
An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).
GPL-3 + file LICENSE
Rfastp is an R wrapper of fastp developed in c++. fastp performs quality control for fastq files. including low quality bases trimming, polyX trimming, adapter auto-detection and trimming, paired-end reads merging, UMI sequence/id handling. Rfastp can concatenate multiple files into one file (like shell command cat) and accept multiple files as input.
- package bioconductor-rfastp¶
- Required By
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-rfastp
and update with:
conda update bioconductor-rfastp
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rfastp:<tag>
(see bioconductor-rfastp/tags for valid values for