- recipe bioconductor-rfastp
An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/Rfastp.html
- License
GPL-3 + file LICENSE
- Recipe
Rfastp is an R wrapper of fastp developed in c++. fastp performs quality control for fastq files. including low quality bases trimming, polyX trimming, adapter auto-detection and trimming, paired-end reads merging, UMI sequence/id handling. Rfastp can concatenate multiple files into one file (like shell command cat) and accept multiple files as input.
- package bioconductor-rfastp¶
-
- Versions
1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-2
,1.0.0-1
- Depends
bioconductor-rhtslib
>=1.26.0,<1.27.0
bioconductor-zlibbioc
>=1.40.0,<1.41.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-rfastp
and update with:
conda update bioconductor-rfastp
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rfastp:<tag>
(see bioconductor-rfastp/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rfastp/README.html)