- recipe bioconductor-rfpred
Assign rfPred functional prediction scores to a missense variants list
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/rfPred.html
- License:
GPL (>=2 )
- Recipe:
- Links:
biotools: rfpred, doi: 10.1101/037127
Based on external numerous data files where rfPred scores are pre-calculated on all genomic positions of the human exome, the package gives rfPred scores to missense variants identified by the chromosome, the position (hg19 version), the referent and alternative nucleotids and the uniprot identifier of the protein. Note that for using the package, the user has to download the TabixFile and index (approximately 3.3 Go).
- package bioconductor-rfpred¶
-
- Versions:
1.36.0-0
,1.32.0-2
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.36.0-0
,1.32.0-2
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
- Depends:
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rfpred
and update with:
conda update bioconductor-rfpred
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rfpred:<tag>
(see bioconductor-rfpred/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rfpred/README.html)