recipe bioconductor-rfpred

Assign rfPred functional prediction scores to a missense variants list

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/rfPred.html

License:

GPL (>=2 )

Recipe:

/bioconductor-rfpred/meta.yaml

Links:

biotools: rfpred, doi: 10.1101/037127

Based on external numerous data files where rfPred scores are pre-calculated on all genomic positions of the human exome, the package gives rfPred scores to missense variants identified by the chromosome, the position (hg19 version), the referent and alternative nucleotids and the uniprot identifier of the protein. Note that for using the package, the user has to download the TabixFile and index (approximately 3.3 Go).

package bioconductor-rfpred

Versions:

1.36.0-0,  1.32.0-2,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0, 

1.36.0-0,  1.32.0-2,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0

Depends:

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-data.table

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rfpred

and update with:

conda update bioconductor-rfpred

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rfpred:<tag>

(see bioconductor-rfpred/tags for valid values for <tag>)

Download stats

Link to this page

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