recipe bioconductor-rgadem

de novo motif discovery

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/rGADEM.html

License:

Artistic-2.0

Recipe:

/bioconductor-rgadem/meta.yaml

Links:

biotools: rgadem, doi: 10.1371/journal.pone.0016432

rGADEM is an efficient de novo motif discovery tool for large-scale genomic sequence data. It is an open-source R package, which is based on the GADEM software.

package bioconductor-rgadem

Versions:

2.46.0-0,  2.42.0-2,  2.42.0-1,  2.42.0-0,  2.40.0-0,  2.38.0-1,  2.38.0-0,  2.36.0-0,  2.34.0-0, 

2.46.0-0,  2.42.0-2,  2.42.0-1,  2.42.0-0,  2.40.0-0,  2.38.0-1,  2.38.0-0,  2.36.0-0,  2.34.0-0,  2.32.0-1,  2.30.0-0,  2.28.0-0,  2.26.0-0,  2.24.0-0,  2.22.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-seqlogo >=1.64.0,<1.65.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rgadem

and update with:

conda update bioconductor-rgadem

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rgadem:<tag>

(see bioconductor-rgadem/tags for valid values for <tag>)

Download stats

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