- recipe bioconductor-rgntx
Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity
- Homepage:
- License:
Artistic-2.0
- Recipe:
RgnTX allows the integration of transcriptome annotations so as to model the complex alternative splicing patterns. It supports the testing of transcriptome elements without clear isoform association, which is often the real scenario due to technical limitations. It involves functions that do permutaion test for evaluating association between features and transcriptome regions.
- package bioconductor-rgntx¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-regioner
>=1.30.0,<1.31.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-txdb.hsapiens.ucsc.hg19.knowngene
>=3.2.0,<3.3.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rgntx
and update with:
conda update bioconductor-rgntx
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rgntx:<tag>
(see bioconductor-rgntx/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rgntx/README.html)