recipe bioconductor-rgsepd

Gene Set Enrichment / Projection Displays

Homepage

https://bioconductor.org/packages/3.14/bioc/html/rgsepd.html

License

GPL-3

Recipe

/bioconductor-rgsepd/meta.yaml

Links

biotools: rgsepd, doi: 10.1038/nmeth.3252

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

package bioconductor-rgsepd

(downloads) docker_bioconductor-rgsepd

Versions
1.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-11.14.0-01.12.0-0

1.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-11.14.0-01.12.0-01.10.0-01.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rgsepd

and update with:

conda update bioconductor-rgsepd

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rgsepd:<tag>

(see bioconductor-rgsepd/tags for valid values for <tag>)

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