recipe bioconductor-rhdf5filters

HDF5 Compression Filters



BSD_2_clause + file LICENSE



Provides a collection of additional compression filters for HDF5 datasets. The package is intended to provide seemless integration with rhdf5, however the compiled filters can also be used with external applications.

package bioconductor-rhdf5filters

(downloads) docker_bioconductor-rhdf5filters



depends bioconductor-rhdf5lib:


depends bioconductor-rhdf5lib:


depends libblas:


depends libgcc-ng:


depends liblapack:


depends libstdcxx-ng:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rhdf5filters

and update with::

   mamba update bioconductor-rhdf5filters

To create a new environment, run:

mamba create --name myenvname bioconductor-rhdf5filters

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-rhdf5filters/tags`_ for valid values for ``<tag>``)

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