- recipe bioconductor-rhisat2
R Wrapper for HISAT2 Aligner
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/Rhisat2.html
- License:
GPL-3
- Recipe:
An R interface to the HISAT2 spliced short-read aligner by Kim et al. (2015). The package contains wrapper functions to create a genome index and to perform the read alignment to the generated index.
- package bioconductor-rhisat2¶
-
- Versions:
1.14.0-0
,1.10.0-2
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.14.0-0
,1.10.0-2
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.3-0
- Depends:
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-sgseq
>=1.32.0,<1.33.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rhisat2
and update with:
conda update bioconductor-rhisat2
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rhisat2:<tag>
(see bioconductor-rhisat2/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rhisat2/README.html)