recipe bioconductor-rhisat2

R Wrapper for HISAT2 Aligner

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Rhisat2.html

License:

GPL-3

Recipe:

/bioconductor-rhisat2/meta.yaml

An R interface to the HISAT2 spliced short-read aligner by Kim et al. (2015). The package contains wrapper functions to create a genome index and to perform the read alignment to the generated index.

package bioconductor-rhisat2

Versions:

1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0, 

1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.3-0

Depends:

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-sgseq >=1.32.0,<1.33.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-circseqaligntk

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rhisat2

and update with:

conda update bioconductor-rhisat2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rhisat2:<tag>

(see bioconductor-rhisat2/tags for valid values for <tag>)

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