recipe bioconductor-ribocrypt

Interactive visualization in genomics

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/RiboCrypt.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-ribocrypt/meta.yaml

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

package bioconductor-ribocrypt

versions:

1.6.0-0,  1.4.0-0,  1.0.0-0

depends bioconductor-biocgenerics:

>=0.46.0,<0.47.0

depends bioconductor-biocparallel:

>=1.34.0,<1.35.0

depends bioconductor-biostrings:

>=2.68.0,<2.69.0

depends bioconductor-genomeinfodb:

>=1.36.0,<1.37.0

depends bioconductor-genomicfeatures:

>=1.52.0,<1.53.0

depends bioconductor-genomicranges:

>=1.52.0,<1.53.0

depends bioconductor-iranges:

>=2.34.0,<2.35.0

depends bioconductor-orfik:

>=1.20.0,<1.21.0

depends r-base:

>=4.3,<4.4.0a0

depends r-bslib:

depends r-data.table:

depends r-dplyr:

depends r-ggplot2:

depends r-htmlwidgets:

depends r-httr:

depends r-jsonlite:

depends r-knitr:

depends r-markdown:

depends r-nglviewer:

depends r-plotly:

depends r-rcurl:

depends r-rlang:

depends r-shiny:

depends r-shinycssloaders:

depends r-shinyhelper:

depends r-shinyjqui:

depends r-stringr:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ribocrypt

and update with::

   mamba update bioconductor-ribocrypt

To create a new environment, run:

mamba create --name myenvname bioconductor-ribocrypt

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ribocrypt:<tag>

(see `bioconductor-ribocrypt/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ribocrypt/README.html)