recipe bioconductor-ribocrypt

Interactive visualization in genomics

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/RiboCrypt.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-ribocrypt/meta.yaml

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

package bioconductor-ribocrypt

Versions:

1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-orfik >=1.14.0,<1.15.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dplyr

• r-ggplot2

• r-plotly

• r-rlang

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ribocrypt

and update with:

conda update bioconductor-ribocrypt

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ribocrypt:<tag>

(see bioconductor-ribocrypt/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ribocrypt/README.html)