recipe bioconductor-riboprofiling

Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RiboProfiling.html

License:

GPL-3

Recipe:

/bioconductor-riboprofiling/meta.yaml

Links:

biotools: riboprofiling, doi: 10.12688/f1000research.8964.1

Starting with a BAM file, this package provides the necessary functions for quality assessment, read start position recalibration, the counting of reads on CDS, 3'UTR, and 5'UTR, plotting of count data: pairs, log fold-change, codon frequency and coverage assessment, principal component analysis on codon coverage.

package bioconductor-riboprofiling

(downloads) docker_bioconductor-riboprofiling

Versions:
1.28.0-01.24.0-01.22.0-01.20.0-11.20.0-01.18.0-01.16.0-01.14.0-11.12.0-1

1.28.0-01.24.0-01.22.0-01.20.0-11.20.0-01.18.0-01.16.0-01.14.0-11.12.0-11.12.0-01.10.0-01.7.1-01.6.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-riboprofiling

and update with:

conda update bioconductor-riboprofiling

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-riboprofiling:<tag>

(see bioconductor-riboprofiling/tags for valid values for <tag>)

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