recipe bioconductor-ribosomeprofilingqc

Ribosome Profiling Quality Control

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ribosomeProfilingQC.html

License

GPL (>=3) + file LICENSE

Recipe

/bioconductor-ribosomeprofilingqc/meta.yaml

Ribo-Seq (also named ribosome profiling or footprinting) measures translatome (unlike RNA-Seq, which sequences the transcriptome) by direct quantification of the ribosome-protected fragments (RPFs). This package provides the tools for quality assessment of ribosome profiling. In addition, it can preprocess Ribo-Seq data for subsequent differential analysis.

package bioconductor-ribosomeprofilingqc

(downloads) docker_bioconductor-ribosomeprofilingqc

Versions

1.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ribosomeprofilingqc

and update with:

conda update bioconductor-ribosomeprofilingqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ribosomeprofilingqc:<tag>

(see bioconductor-ribosomeprofilingqc/tags for valid values for <tag>)