bioconductor-ringo¶
The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.
| Home | http://bioconductor.org/packages/3.6/bioc/html/Ringo.html |
| Versions | 1.38.0, 1.40.0, 1.42.0 |
| License | Artistic-2.0 |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-ringo |
| Links | biotools: ringo |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ringo
and update with:
conda update bioconductor-ringo
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-ringo.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/bioconductor-ringo/README.html)
