- recipe bioconductor-rjmcmcnucleosomes
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/RJMCMCNucleosomes.html
- License:
Artistic-2.0
- Recipe:
This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.
- package bioconductor-rjmcmcnucleosomes¶
-
- Versions:
1.22.0-0
,1.18.0-2
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.22.0-0
,1.18.0-2
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-consensusseeker
>=1.26.0,<1.27.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-rcpp
>=0.12.5
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rjmcmcnucleosomes
and update with:
conda update bioconductor-rjmcmcnucleosomes
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rjmcmcnucleosomes:<tag>
(see bioconductor-rjmcmcnucleosomes/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rjmcmcnucleosomes/README.html)