- recipe bioconductor-rlseq
RLSeq: An analysis package for R-loop mapping data
- Homepage
- License
MIT + file LICENSE
- Recipe
RLSeq is a toolkit for analyzing and evaluating R-loop mapping datasets. RLSeq serves two primary purposes: (1) to facilitate the evaluation of dataset quality, and (2) to enable R-loop analysis in the context of publicly-available data sets from RLBase. The package is intended to provide a simple pipeline, called with the `RLSeq()` function, which performs all main analyses. Individual functions are also accessible and provide custom analysis capabilities. Finally an HTML report is generated with `report()`.
- package bioconductor-rlseq¶
-
- Versions
1.0.0-0
- Depends
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-complexheatmap
>=2.10.0,<2.11.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-regioner
>=1.26.0,<1.27.0
bioconductor-rlhub
>=1.0.0,<1.1.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-rlseq
and update with:
conda update bioconductor-rlseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rlseq:<tag>
(see bioconductor-rlseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rlseq/README.html)