- recipe bioconductor-rmassbank
Workflow to process tandem MS files and build MassBank records
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/RMassBank.html
- License
Artistic-2.0
- Recipe
Workflow to process tandem MS files and build MassBank records. Functions include automated extraction of tandem MS spectra, formula assignment to tandem MS fragments, recalibration of tandem MS spectra with assigned fragments, spectrum cleanup, automated retrieval of compound information from Internet databases, and export to MassBank records.
- package bioconductor-rmassbank¶
-
- Versions
3.4.0-1
,3.4.0-0
,3.2.0-0
,3.0.0-1
,3.0.0-0
,2.13.0-0
,2.12.0-1
,2.10.1-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-msnbase
>=2.20.0,<2.21.0
bioconductor-mzr
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-rmassbank
and update with:
conda update bioconductor-rmassbank
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rmassbank:<tag>
(see bioconductor-rmassbank/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rmassbank/README.html)