recipe bioconductor-rnainteract

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/RNAinteract.html

License

Artistic-2.0

Recipe

/bioconductor-rnainteract/meta.yaml

Links

biotools: rnainteract

package bioconductor-rnainteract

(downloads) docker_bioconductor-rnainteract

Versions

1.30.0-0, 1.28.0-0, 1.26.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rnainteract

and update with:

conda update bioconductor-rnainteract

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnainteract:<tag>

(see bioconductor-rnainteract/tags for valid values for <tag>)