recipe bioconductor-rnamodr.alkanilineseq

Detection of m7G, m3C and D modification by AlkAnilineSeq

Homepage

https://bioconductor.org/packages/3.11/bioc/html/RNAmodR.AlkAnilineSeq.html

License

Artistic-2.0

Recipe

/bioconductor-rnamodr.alkanilineseq/meta.yaml

RNAmodR.AlkAnilineSeq implements the detection of m7G, m3C and D modifications on RNA from experimental data generated with the AlkAnilineSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

package bioconductor-rnamodr.alkanilineseq

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-gviz >=1.32.0,<1.33.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rnamodr >=1.2.0,<1.3.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rnamodr.alkanilineseq

and update with:

conda update bioconductor-rnamodr.alkanilineseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnamodr.alkanilineseq:<tag>

(see bioconductor-rnamodr.alkanilineseq/tags for valid values for <tag>)

Link to this page

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