- recipe bioconductor-rnamodr
Detection of post-transcriptional modifications in high throughput sequencing data
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/RNAmodR.html
- License:
Artistic-2.0
- Recipe:
RNAmodR provides classes and workflows for loading/aggregation data from high througput sequencing aimed at detecting post-transcriptional modifications through analysis of specific patterns. In addition, utilities are provided to validate and visualize the results. The RNAmodR package provides a core functionality from which specific analysis strategies can be easily implemented as a seperate package.
- package bioconductor-rnamodr¶
-
- Versions:
1.8.0-0
,1.6.0-0
,1.4.2-0
,1.4.0-0
,1.2.1-0
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-modstrings
>=1.10.0,<1.11.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rnamodr
and update with:
conda update bioconductor-rnamodr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rnamodr:<tag>
(see bioconductor-rnamodr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rnamodr/README.html)