recipe bioconductor-rnamodr

Detection of post-transcriptional modifications in high throughput sequencing data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/RNAmodR.html

License

Artistic-2.0

Recipe

/bioconductor-rnamodr/meta.yaml

RNAmodR provides classes and workflows for loading/aggregation data from high througput sequencing aimed at detecting post-transcriptional modifications through analysis of specific patterns. In addition, utilities are provided to validate and visualize the results. The RNAmodR package provides a core functionality from which specific analysis strategies can be easily implemented as a seperate package.

package bioconductor-rnamodr

Versions

1.4.0-0,  1.2.1-0,  1.0.0-0

Depends

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-biocparallel >=1.24.0,<1.25.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-bsgenome >=1.58.0,<1.59.0

• bioconductor-genomeinfodb >=1.26.0,<1.27.0

• bioconductor-genomicalignments >=1.26.0,<1.27.0

• bioconductor-genomicfeatures >=1.42.0,<1.43.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-gviz >=1.34.0,<1.35.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-modstrings >=1.6.0,<1.7.0

• bioconductor-rsamtools >=2.6.0,<2.7.0

• bioconductor-rtracklayer >=1.50.0,<1.51.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• r-base >=4.0,<4.1.0a0

• r-colorramps

• r-ggplot2

• r-matrixstats

• r-rcolorbrewer

• r-reshape2

• r-rocr

Required By

• bioconductor-rnamodr.ml

• bioconductor-rnamodr.alkanilineseq

• bioconductor-rnamodr.ribomethseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rnamodr

and update with:

conda update bioconductor-rnamodr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnamodr:<tag>

(see bioconductor-rnamodr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rnamodr/README.html)