recipe bioconductor-rnbeads

RnBeads facilitates comprehensive analysis of various types of DNA methylation data at the genome scale.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/RnBeads.html

License

GPL-3

Recipe

/bioconductor-rnbeads/meta.yaml

package bioconductor-rnbeads

(downloads) docker_bioconductor-rnbeads

Versions

2.0.0-0, 1.12.1-0, 1.10.8-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-illuminaio

>=0.24.0,<0.25.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-methylumi

>=2.28.0,<2.29.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

Depends r-ff

Depends r-fields

Depends r-ggplot2

>=0.9.2

Depends r-gplots

Depends r-gridextra

Depends r-mass

Depends r-matrixstats

Depends r-plyr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rnbeads

and update with:

conda update bioconductor-rnbeads

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnbeads:<tag>

(see bioconductor-rnbeads/tags for valid values for <tag>)