recipe bioconductor-roar

Identify differential APA usage from RNA-seq alignments

Homepage

https://bioconductor.org/packages/3.11/bioc/html/roar.html

License

GPL-3

Recipe

/bioconductor-roar/meta.yaml

Links

biotools: roar, doi: 10.1038/nmeth.3252

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

package bioconductor-roar

Versions

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

Required By

• bioconductor-xbseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-roar

and update with:

conda update bioconductor-roar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-roar:<tag>

(see bioconductor-roar/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-roar/README.html)