recipe bioconductor-roar

Identify differential APA usage from RNA-seq alignments

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/roar.html

License:

GPL-3

Recipe:

/bioconductor-roar/meta.yaml

Links:

biotools: roar, doi: 10.1038/nmeth.3252

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

package bioconductor-roar

Versions:

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.0-0, 

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-roar

and update with:

conda update bioconductor-roar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-roar:<tag>

(see bioconductor-roar/tags for valid values for <tag>)

Download stats

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