recipe bioconductor-rqc

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/Rqc.html

License

GPL (>= 2)

Recipe

/bioconductor-rqc/meta.yaml

package bioconductor-rqc

Versions

1.16.2-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biocparallel >=1.16.0,<1.17.0

• bioconductor-biocstyle >=2.10.0,<2.11.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-biovizbase >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicfiles >=1.18.0,<1.19.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-shortread >=1.40.0,<1.41.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-digest

• r-ggplot2

• r-knitr >=1.7

• r-markdown

• r-plyr

• r-rcpp >=0.11.6

• r-reshape2

• r-shiny

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rqc

and update with:

conda update bioconductor-rqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rqc:<tag>

(see bioconductor-rqc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rqc/README.html)