recipe bioconductor-rsemmed

An interface to the Semantic MEDLINE database






A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.

package bioconductor-rsemmed

(downloads) docker_bioconductor-rsemmed



depends r-base:


depends r-dplyr:

depends r-igraph:

depends r-magrittr:

depends r-stringr:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rsemmed

and update with::

   mamba update bioconductor-rsemmed

To create a new environment, run:

mamba create --name myenvname bioconductor-rsemmed

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-rsemmed/tags`_ for valid values for ``<tag>``)

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