recipe bioconductor-rsubread

Mapping, quantification and variant analysis of sequencing data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Rsubread.html

License:

GPL (>=3)

Recipe:

/bioconductor-rsubread/meta.yaml

Links:

biotools: rsubread

Alignment, quantification and analysis of RNA sequencing data (including both bulk RNA-seq and scRNA-seq) and DNA sequenicng data (including ATAC-seq, ChIP-seq, WGS, WES etc). Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. Can be applied to all major sequencing techologies and to both short and long sequence reads.

package bioconductor-rsubread

Versions:

2.12.0-1,  2.12.0-0,  2.8.2-0,  2.8.1-0,  2.8.0-0,  2.6.1-0,  2.4.3-0,  2.4.0-0,  2.2.1-0, 

2.12.0-1,  2.12.0-0,  2.8.2-0,  2.8.1-0,  2.8.0-0,  2.6.1-0,  2.4.3-0,  2.4.0-0,  2.2.1-0,  2.0.0-0,  1.34.6-0,  1.34.4-0,  1.34.0-0,  1.32.4-0,  1.32.2-0,  1.30.9-0,  1.28.1-0,  1.28.0-0,  1.26.1-0,  1.25.2-0,  1.23.0-0,  1.22.1-0

Depends:

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-matrix

Required By:

• bioconductor-fraser

• bioconductor-ribosomeprofilingqc

• bioconductor-scruff

• r-crisprcleanr

• bioconductor-excluster

• bioconductor-diffutr

• bioconductor-dupradar

• bioconductor-apalyzer

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rsubread

and update with:

conda update bioconductor-rsubread

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rsubread:<tag>

(see bioconductor-rsubread/tags for valid values for <tag>)

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