- recipe bioconductor-rsvsim
RSVSim: an R/Bioconductor package for the simulation of structural variations
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/RSVSim.html
- License:
LGPL-3
- Recipe:
- Links:
biotools: rsvsim, doi: 10.1093/bioinformatics/btt198
RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.
- package bioconductor-rsvsim¶
-
- Versions:
1.38.0-0
,1.34.0-0
,1.32.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.22.0-0
,1.38.0-0
,1.34.0-0
,1.32.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-shortread
>=1.56.0,<1.57.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rsvsim
and update with:
conda update bioconductor-rsvsim
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rsvsim:<tag>
(see bioconductor-rsvsim/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rsvsim/README.html)