recipe bioconductor-rsvsim

RSVSim: an R/Bioconductor package for the simulation of structural variations

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RSVSim.html

License:

LGPL-3

Recipe:

/bioconductor-rsvsim/meta.yaml

Links:

biotools: rsvsim, doi: 10.1093/bioinformatics/btt198

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

package bioconductor-rsvsim

Versions:

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0, 

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-shortread >=1.56.0,<1.57.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rsvsim

and update with:

conda update bioconductor-rsvsim

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rsvsim:<tag>

(see bioconductor-rsvsim/tags for valid values for <tag>)

Download stats

Link to this page

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