recipe bioconductor-rtcga.rnaseq

Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Rna-seq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.

Homepage

https://bioconductor.org/packages/3.9/data/experiment/html/RTCGA.rnaseq.html

License

GPL-2

Recipe

/bioconductor-rtcga.rnaseq/meta.yaml

package bioconductor-rtcga.rnaseq

(downloads) docker_bioconductor-rtcga.rnaseq

Versions

20151101.14.0-1, 20151101.14.0-0, 20151101.12.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtcga.rnaseq

and update with:

conda update bioconductor-rtcga.rnaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtcga.rnaseq:<tag>

(see bioconductor-rtcga.rnaseq/tags for valid values for <tag>)