recipe bioconductor-rtn

RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RTN.html

License:

Artistic-2.0

Recipe:

/bioconductor-rtn/meta.yaml

A transcriptional regulatory network (TRN) consists of a collection of transcription factors (TFs) and the regulated target genes. TFs are regulators that recognize specific DNA sequences and guide the expression of the genome, either activating or repressing the expression the target genes. The set of genes controlled by the same TF forms a regulon. This package provides classes and methods for the reconstruction of TRNs and analysis of regulons.

package bioconductor-rtn

Versions:

2.22.0-0,  2.18.0-0,  2.16.0-0,  2.14.1-0,  2.14.0-0,  2.12.0-0,  2.10.0-0,  2.8.1-0,  2.6.3-0, 

2.22.0-0,  2.18.0-0,  2.16.0-0,  2.14.1-0,  2.14.0-0,  2.12.0-0,  2.10.0-0,  2.8.1-0,  2.6.3-0,  2.6.0-0

Depends:

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-minet >=3.56.0,<3.57.0

• bioconductor-reder >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-viper >=1.32.0,<1.33.0

• r-base >=4.2,<4.3.0a0

• r-car

• r-data.table

• r-igraph

• r-mixtools

• r-pheatmap

• r-pwr

• r-snow

Required By:

• bioconductor-rtnsurvival

• bioconductor-rtnduals

• bioconductor-fletcher2013b

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rtn

and update with:

conda update bioconductor-rtn

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtn:<tag>

(see bioconductor-rtn/tags for valid values for <tag>)

Download stats

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