recipe bioconductor-rtn

This package provides classes and methods for transcriptional network inference and analysis. Modulators of transcription factor activity are assessed by conditional mutual information, and master regulators are mapped to phenotypes using different strategies, e.g., gene set enrichment, shadow and synergy analyses. Additionally, master regulators can be linked to genetic markers using eQTL/VSE analysis, taking advantage of the haplotype block structure mapped to the human genome in order to explore risk-associated SNPs identified in GWAS studies.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/RTN.html

License

Artistic-2.0

Recipe

/bioconductor-rtn/meta.yaml

package bioconductor-rtn

(downloads) docker_bioconductor-rtn

Versions

2.6.3-0, 2.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtn

and update with:

conda update bioconductor-rtn

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtn:<tag>

(see bioconductor-rtn/tags for valid values for <tag>)