recipe bioconductor-rtnduals

Analysis of co-regulation and inference of 'dual regulons'

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/RTNduals.html

License:

Artistic-2.0

Recipe:

/bioconductor-rtnduals/meta.yaml

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulators can co-operate or compete in influencing targets.

package bioconductor-rtnduals

(downloads) docker_bioconductor-rtnduals

versions:
1.26.0-0,  1.24.0-0,  1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.1-0,  1.14.0-0,  1.12.0-0,  1.10.0-0, 

1.26.0-0,  1.24.0-0,  1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.1-0,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.1-0,  1.6.0-0

depends bioconductor-rtn:

>=2.26.0,<2.27.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rtnduals

and update with::

   mamba update bioconductor-rtnduals

To create a new environment, run:

mamba create --name myenvname bioconductor-rtnduals

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rtnduals:<tag>

(see `bioconductor-rtnduals/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rtnduals/README.html)