recipe bioconductor-rtracklayer

R interface to genome annotation files and the UCSC genome browser

Homepage

https://bioconductor.org/packages/3.10/bioc/html/rtracklayer.html

License

Artistic-2.0 + file LICENSE

Recipe

/bioconductor-rtracklayer/meta.yaml

Links

biotools: rtracklayer

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

package bioconductor-rtracklayer

(downloads) docker_bioconductor-rtracklayer

Versions

1.46.0-0, 1.44.2-1, 1.44.2-0, 1.44.0-1, 1.42.1-1, 1.42.1-0, 1.40.6-0, 1.38.3-0, 1.38.0-0, 1.36.6-0, 1.34.2-1, 1.34.1-0, 1.32.2-1, 1.30.1-0, 1.30.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtracklayer

and update with:

conda update bioconductor-rtracklayer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtracklayer:<tag>

(see bioconductor-rtracklayer/tags for valid values for <tag>)