recipe bioconductor-ruvcorr

Removal of unwanted variation for gene-gene correlations and related analysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/RUVcorr.html

License:

GPL-2

Recipe:

/bioconductor-ruvcorr/meta.yaml

RUVcorr allows to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data.

package bioconductor-ruvcorr

Versions:

1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-1,  1.14.0-0

Depends:

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-bladderbatch >=1.32.0,<1.33.0

• r-base >=4.1,<4.2.0a0

• r-corrplot

• r-gridextra

• r-lattice

• r-mass

• r-psych

• r-reshape2

• r-snowfall

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ruvcorr

and update with:

conda update bioconductor-ruvcorr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ruvcorr:<tag>

(see bioconductor-ruvcorr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ruvcorr/README.html)