recipe bioconductor-ruvcorr

Removal of unwanted variation for gene-gene correlations and related analysis

Homepage

https://bioconductor.org/packages/3.10/bioc/html/RUVcorr.html

License

GPL-2

Recipe

/bioconductor-ruvcorr/meta.yaml

RUVcorr allows to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data.

package bioconductor-ruvcorr

Versions

1.18.0-1, 1.16.0-1, 1.14.0-0

Depends

• bioconductor-biocparallel >=1.20.0,<1.21.0

• bioconductor-bladderbatch >=1.24.0,<1.25.0

• r-base >=3.6,<3.7.0a0

• r-corrplot

• r-gridextra

• r-lattice

• r-mass

• r-psych

• r-reshape2

• r-snowfall

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ruvcorr

and update with:

conda update bioconductor-ruvcorr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ruvcorr:<tag>

(see bioconductor-ruvcorr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ruvcorr/README.html)