recipe bioconductor-sangeranalyser

sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R

Homepage

https://bioconductor.org/packages/3.14/bioc/html/sangeranalyseR.html

License

GPL-2

Recipe

/bioconductor-sangeranalyser/meta.yaml

This package builds on sangerseqR to allow users to create contigs from collections of Sanger sequencing reads. It provides a wide range of options for a number of commonly-performed actions including read trimming, detecting secondary peaks, and detecting indels using a reference sequence. All parameters can be adjusted interactively either in R or in the associated Shiny applications. There is extensive online documentation, and the package can outputs detailed HTML reports, including chromatograms.

package bioconductor-sangeranalyser

(downloads) docker_bioconductor-sangeranalyser

Versions

1.4.0-01.2.0-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sangeranalyser

and update with:

conda update bioconductor-sangeranalyser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sangeranalyser:<tag>

(see bioconductor-sangeranalyser/tags for valid values for <tag>)

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