- recipe bioconductor-sangeranalyser
sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/sangeranalyseR.html
- License
GPL-2
- Recipe
This package builds on sangerseqR to allow users to create contigs from collections of Sanger sequencing reads. It provides a wide range of options for a number of commonly-performed actions including read trimming, detecting secondary peaks, and detecting indels using a reference sequence. All parameters can be adjusted interactively either in R or in the associated Shiny applications. There is extensive online documentation, and the package can outputs detailed HTML reports, including chromatograms.
- package bioconductor-sangeranalyser¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends
bioconductor-biocstyle
>=2.22.0,<2.23.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-decipher
>=2.22.0,<2.23.0
bioconductor-sangerseqr
>=1.30.0,<1.31.0
r-base
>=4.1,<4.2.0a0
r-knitr
>=1.33
r-rmarkdown
>=2.9
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-sangeranalyser
and update with:
conda update bioconductor-sangeranalyser
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-sangeranalyser:<tag>
(see bioconductor-sangeranalyser/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-sangeranalyser/README.html)