recipe bioconductor-saturn

Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applications

Homepage

https://bioconductor.org/packages/3.14/bioc/html/satuRn.html

License

Artistic-2.0

Recipe

/bioconductor-saturn/meta.yaml

satuRn provides a higly performant and scalable framework for performing differential transcript usage analyses. The package consists of three main functions. The first function, fitDTU, fits quasi-binomial generalized linear models that model transcript usage in different groups of interest. The second function, testDTU, tests for differential usage of transcripts between groups of interest. Finally, plotDTU visualizes the usage profiles of transcripts in groups of interest.

package bioconductor-saturn

(downloads) docker_bioconductor-saturn

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-saturn

and update with:

conda update bioconductor-saturn

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-saturn:<tag>

(see bioconductor-saturn/tags for valid values for <tag>)

Download stats