recipe bioconductor-savr

Parse and analyze Illumina SAV files

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/savR.html

License:

AGPL-3

Recipe:

/bioconductor-savr/meta.yaml

Links:

biotools: savr, doi: 10.1038/nmeth.3252

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

package bioconductor-savr

Versions:

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0, 

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0

Depends:

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-gridextra

• r-reshape2

• r-scales

• r-xml

Required By:

• qcumber

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-savr

and update with:

conda update bioconductor-savr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-savr:<tag>

(see bioconductor-savr/tags for valid values for <tag>)

Download stats

Link to this page

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