recipe bioconductor-scale4c

Scale4C: an R/Bioconductor package for scale-space transformation of 4C-seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Scale4C.html

License:

LGPL-3

Recipe:

/bioconductor-scale4c/meta.yaml

Scale4C is an R/Bioconductor package for scale-space transformation and visualization of 4C-seq data. The scale-space transformation is a multi-scale visualization technique to transform a 2D signal (e.g. 4C-seq reads on a genomic interval of choice) into a tesselation in the scale space (2D, genomic position x scale factor) by applying different smoothing kernels (Gauss, with increasing sigma). This transformation allows for explorative analysis and comparisons of the data's structure with other samples.

package bioconductor-scale4c

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-smoothie

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scale4c

and update with:

conda update bioconductor-scale4c

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scale4c:<tag>

(see bioconductor-scale4c/tags for valid values for <tag>)

Download stats

Link to this page

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