recipe bioconductor-scanmirapp

scanMiR shiny application

Homepage

https://bioconductor.org/packages/3.14/bioc/html/scanMiRApp.html

License

GPL-3

Recipe

/bioconductor-scanmirapp/meta.yaml

A shiny interface to the scanMiR package. The application enables the scanning of transcripts and custom sequences for miRNA binding sites, the visualization of KdModels and binding results, as well as browsing predicted repression data. In addition contains the IndexedFst class for fast indexed reading of large GenomicRanges or data.frames, and some utilities for facilitating scans and identifying enriched miRNA-target pairs.

package bioconductor-scanmirapp

(downloads) docker_bioconductor-scanmirapp

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scanmirapp

and update with:

conda update bioconductor-scanmirapp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scanmirapp:<tag>

(see bioconductor-scanmirapp/tags for valid values for <tag>)

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