- recipe bioconductor-scanmirapp
scanMiR shiny application
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/scanMiRApp.html
- License:
GPL-3
- Recipe:
A shiny interface to the scanMiR package. The application enables the scanning of transcripts and custom sequences for miRNA binding sites, the visualization of KdModels and binding results, as well as browsing predicted repression data. In addition contains the IndexedFst class for fast indexed reading of large GenomicRanges or data.frames, and some utilities for facilitating scans and identifying enriched miRNA-target pairs.
- package bioconductor-scanmirapp¶
-
- Versions:
1.4.0-0
,1.0.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-annotationfilter
>=1.22.0,<1.23.0
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-ensembldb
>=2.22.0,<2.23.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-scanmir
>=1.4.0,<1.5.0
bioconductor-scanmirdata
>=1.4.0,<1.5.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scanmirapp
and update with:
conda update bioconductor-scanmirapp
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scanmirapp:<tag>
(see bioconductor-scanmirapp/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scanmirapp/README.html)