recipe bioconductor-scanmirdata

miRNA Affinity models for the scanMiR package

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/scanMiRData.html

License:

GPL-3

Recipe:

/bioconductor-scanmirdata/meta.yaml

This package contains companion data to the scanMiR package. It contains `KdModel` (miRNA 12-mer binding affinity models) collections corresponding to all human, mouse and rat mirbase miRNAs. See the scanMiR package for details.

package bioconductor-scanmirdata

versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.0.0-1,  1.0.0-0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-scanmir:

>=1.12.0,<1.13.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-scanmirdata

and update with::

   mamba update bioconductor-scanmirdata

To create a new environment, run:

mamba create --name myenvname bioconductor-scanmirdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-scanmirdata:<tag>

(see `bioconductor-scanmirdata/tags`_ for valid values for ``<tag>``)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scanmirdata/README.html)