recipe bioconductor-scarray

Large-scale single-cell RNA-seq data manipulation with GDS files

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SCArray.html

License:

GPL-3

Recipe:

/bioconductor-scarray/meta.yaml

Provides large-scale single-cell RNA-seq data manipulation using Genomic Data Structure (GDS) files. It combines dense and sparse matrices stored in GDS files and the Bioconductor infrastructure framework (SingleCellExperiment and DelayedArray) to provide out-of-memory data storage and large-scale manipulation using the R programming language.

package bioconductor-scarray

Versions:

1.6.0-0,  1.2.1-1,  1.2.1-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-delayedmatrixstats >=1.20.0,<1.21.0

• bioconductor-gdsfmt >=1.34.0,<1.35.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scarray

and update with:

conda update bioconductor-scarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scarray:<tag>

(see bioconductor-scarray/tags for valid values for <tag>)

Download stats

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