recipe bioconductor-scatedata

Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/SCATEData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-scatedata/meta.yaml

SCATEData is an ExperimentHub package for SCATE which is a software tool for extracting and enhancing the sparse and discrete Single-cell ATAC-seq Signal.

package bioconductor-scatedata

Versions:

1.8.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0,  0.99.6-0

Depends:

• bioconductor-data-packages >=20221109

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-scate

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scatedata

and update with:

conda update bioconductor-scatedata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scatedata:<tag>

(see bioconductor-scatedata/tags for valid values for <tag>)

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Link to this page

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