recipe bioconductor-scbn

This package provides a scale based normalization (SCBN) method to identify genes with differential expression between different species. It takes into account the available knowledge of conserved orthologous genes and the hypothesis testing framework to detect differentially expressed orthologous genes. The method on this package are described in the article ‘A statistical normalization method and differential expression analysis for RNA-seq data between different species’ by Yan Zhou, Jiadi Zhu, Tiejun Tong, Junhui Wang, Bingqing Lin, Jun Zhang (2018, pending publication).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SCBN.html

License

GPL-2

Recipe

/bioconductor-scbn/meta.yaml

package bioconductor-scbn

(downloads) docker_bioconductor-scbn

Versions

1.2.0-1, 1.2.0-0, 1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scbn

and update with:

conda update bioconductor-scbn

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scbn:<tag>

(see bioconductor-scbn/tags for valid values for <tag>)