- recipe bioconductor-scdblfinder
scDblFinder
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/scDblFinder.html
- License:
GPL-3 + file LICENSE
- Recipe:
The scDblFinder package gathers various methods for the detection and handling of doublets/multiplets in single-cell sequencing data (i.e. multiple cells captured within the same droplet or reaction volume). It includes methods formerly found in the scran package, the new fast and comprehensive scDblFinder method, and a reimplementation of the Amulet detection method for single-cell ATAC-seq.
- package bioconductor-scdblfinder¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocneighbors
>=1.16.0,<1.17.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biocsingular
>=1.14.0,<1.15.0
bioconductor-bluster
>=1.8.0,<1.9.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-scater
>=1.26.0,<1.27.0
bioconductor-scran
>=1.26.0,<1.27.0
bioconductor-scuttle
>=1.8.0,<1.9.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scdblfinder
and update with:
conda update bioconductor-scdblfinder
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scdblfinder:<tag>
(see bioconductor-scdblfinder/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scdblfinder/README.html)