recipe bioconductor-scdblfinder

scDblFinder

Homepage

https://bioconductor.org/packages/3.11/bioc/html/scDblFinder.html

License

GPL-3

Recipe

/bioconductor-scdblfinder/meta.yaml

Efficient identification of doublets in single-cell RNAseq directly from counts using overclustering-based generation of artifical doublets.

package bioconductor-scdblfinder

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocneighbors >=1.6.0,<1.7.0

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-biocsingular >=1.4.0,<1.5.0

• bioconductor-delayedarray >=0.14.0,<0.15.0

• bioconductor-scater >=1.16.0,<1.17.0

• bioconductor-scran >=1.16.0,<1.17.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-dplyr

• r-ggplot2

• r-igraph

• r-matrix

• r-matrixstats

• r-randomforest

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scdblfinder

and update with:

conda update bioconductor-scdblfinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scdblfinder:<tag>

(see bioconductor-scdblfinder/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scdblfinder/README.html)