- recipe bioconductor-scds
In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data
- Homepage
- License
MIT + file LICENSE
- Recipe
In single cell RNA sequencing (scRNA-seq) data combinations of cells are sometimes considered a single cell (doublets). The scds package provides methods to annotate doublets in scRNA-seq data computationally.
- package bioconductor-scds¶
-
- Versions
1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-scds
and update with:
conda update bioconductor-scds
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scds:<tag>
(see bioconductor-scds/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
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