recipe bioconductor-scds

In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/scds.html

License

MIT + file LICENSE

Recipe

/bioconductor-scds/meta.yaml

In single cell RNA sequencing (scRNA-seq) data combinations of cells are sometimes considered a single cell (doublets). The scds package provides methods to annotate doublets in scRNA-seq data computationally.

package bioconductor-scds

Versions

1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-matrix

• r-proc

• r-xgboost

Required By

• bioconductor-singlecelltk

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scds

and update with:

conda update bioconductor-scds

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scds:<tag>

(see bioconductor-scds/tags for valid values for <tag>)

Download stats

Link to this page

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