- recipe bioconductor-scds
In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data
- Homepage:
- License:
MIT + file LICENSE
- Recipe:
In single cell RNA sequencing (scRNA-seq) data combinations of cells are sometimes considered a single cell (doublets). The scds package provides methods to annotate doublets in scRNA-seq data computationally.
- package bioconductor-scds¶
-
- Versions:
1.14.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends:
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scds
and update with:
conda update bioconductor-scds
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scds:<tag>
(see bioconductor-scds/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scds/README.html)