- recipe bioconductor-scgps
A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)
- Homepage:
- License:
GPL-3
- Recipe:
The package implements two main algorithms to answer two key questions: a SCORE (Stable Clustering at Optimal REsolution) to find subpopulations, followed by scGPS to investigate the relationships between subpopulations.
- package bioconductor-scgps¶
-
- Versions:
1.12.0-0
,1.8.0-2
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-deseq2
>=1.38.0,<1.39.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-caret
>=6.0
r-ggplot2
>=2.2.1
r-glmnet
>2.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scgps
and update with:
conda update bioconductor-scgps
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scgps:<tag>
(see bioconductor-scgps/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scgps/README.html)